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Bio::Seq::SeqFastaSpeedFactory.3pm
Langue: en
Version: 2010-05-19 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Seq::SeqFastaSpeedFactory - Instantiates a new Bio::PrimarySeqI (or derived class) through a factorySYNOPSIS
use Bio::Seq::SeqFastaSpeedFactory; my $factory = Bio::Seq::SeqFastaSpeedFactory->new(); my $seq = $factory->create(-seq => 'WYRAVLC', -id => 'name'); # If you want the factory to create Bio::Seq objects instead # of the default Bio::PrimarySeq objects, use the -type parameter: my $factory = Bio::Seq::SeqFastaSpeedFactory->new(-type => 'Bio::Seq');
DESCRIPTION
This object will build Bio::Seq objects generically.FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new(); Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object Returns : Bio::Seq::SeqFastaSpeedFactory Args : -type => string, name of a PrimarySeqI derived class This is optional. Default=Bio::PrimarySeq.
create
Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates a new Bio::Seq object, correctly built but very fast, knowing stuff about Bio::PrimarySeq and Bio::Seq Returns : Bio::Seq Args : initialization parameters specific to the type of sequence object we want. Typically -seq => $str, -id => $name
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Design ©2006-2024 Maxime Vantorre