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Bio::Structure::Residue.3pm
Langue: en
Version: 2010-05-19 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Structure::Residue - Bioperl structure Object, describes a ResidueSYNOPSIS
#add synopsis here
DESCRIPTION
This object stores a Bio::Structure::ResidueFEEDBACK
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Support
Please direct usage questions or support issues to the mailing list:bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR - Kris Boulez
Email kris.boulez@algonomics.comAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new()
Title : new() Usage : $residue = Bio::Structure::Residue->new( -id => 'human_id', ); Function: Returns a new Bio::Structure::Residue object from basic constructors. Probably most called from Bio::Structure::IO. Returns : a new Bio::Structure::Residue object
atom()
Title : atom Usage : Function: nothing usefull untill I get symbolic references to do what I want Returns : Args :
add_atom()
Title : add_atom Usage : Function: nothing usefull untill I get symbolic references to do what I want Returns : Args :
chain()
Title : chain Usage : $chain = $residue->chain($chain) Function: Sets the Chain this Residue belongs to Returns : Returns the Chain this Residue belongs to Args : reference to a Chain
id()
Title : id Usage : $residue->id("TRP-35") Function: Gets/sets the ID for this residue Returns : the ID Args : the ID
DESTROY()
Title : DESTROY Usage : Function: destructor ( get rid of circular references ) Returns : Args :
_remove_atoms()
Title : _remove_atoms Usage : Function: Removes the atoms attached to a Residue. Tells the atoms they don't belong to this Residue any more Returns : Args :
_remove_chain()
Title : _remove_chain Usage : Function: Removes the Chain this Residue is atttached to. Returns : Args :
_grandparent()
Title : _grandparent Usage : Function: get/set a symbolic reference to our grandparent Returns : Args :
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