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Bio::Tools::PrositeScan.3pm
Langue: en
Version: 2009-03-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::Tools::PrositeScan - Parser for ps_scan resultSYNOPSIS
use Bio::Tools::PrositeScan; my $factory = Bio::Tools::PrositeScan->new( -file => 'out.PrositeScan' ); while(my $match = $factory->next_prediction){ # $match is of Bio::SeqFeature::FeaturePair my $q_id = $fatch->feature1->seq_id; my $h_id = $fatch->feature2->seq_id; }
DESCRIPTION
This is the parser of the output of ps_scan program. It takes either a file handler or a file name, and returns a Bio::SeqFeature::FeaturePair object.AUTHOR
Juguang Xiao, juguang@tll.org.sgnew
Title : new Usage : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan'); Bio::Tools::PrositeScan->new(-fh => \*FH); Returns : L<Bio::Tools::PrositeScan>
next_prediction
Title : new Usage : while($result = $factory->next_prediction){ ; } Returns : a Bio::SeqFeature::FeaturePair object
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