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Bio::Tools::Run::PiseApplication::drawgram.3pm
Langue: en
Version: 2008-11-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Tools::Run::PiseApplication::drawgramSYNOPSIS
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DESCRIPTION
Bio::Tools::Run::PiseApplication::drawgramBioperl class for: Phylip drawgram - Plots a cladogram- or phenogram-like rooted tree (Felsenstein) References: Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle. Felsenstein, J. 1989. PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166. Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/drawgram.html for available values): drawgram (String) treefile (InFile) Tree File pipe: phylip_tree screen_type (String) plotter (Excl) Which plotter or printer will the tree be drawn on xres (Float) X resolution yres (Float) Y resolution laserjet_resolution (Excl) Laserjet resolution pcx_resolution (Excl) Paintbrush PCX resolution screen (String) grows (Excl) Tree grows... tree_style (Excl) Tree style branch_lengths (Switch) Use branch lengths horizontal_margins (Float) Horizontal margins vertical_margins (Float) Vertical margins scale (Float) Scale of branch length (default: Automatically rescaled) depth (Float) Depth/Breadth of tree stem (Float) Stem-length/tree-depth character_height (Float) Character ht / tip space ancestral (Excl) Ancestral nodes font (String) Font (PostScript only) tops (String) topict (String) confirm (String)
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR
Catherine Letondal (letondal@pasteur.fr)COPYRIGHT
Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided ``as is'' without warranty of any kind.SEE ALSO
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- http://bioweb.pasteur.fr/seqanal/interfaces/drawgram.html
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- Bio::Tools::Run::PiseApplication
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- Bio::Tools::Run::AnalysisFactory::Pise
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- Bio::Tools::Run::PiseJob
new
Title : new() Usage : my $drawgram = Bio::Tools::Run::PiseApplication::drawgram->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::drawgram object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $drawgram = $factory->program('drawgram'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::drawgram.
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