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Bio::Tools::Run::PiseApplication::homology.3pm
Langue: en
Version: 2008-11-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Tools::Run::PiseApplication::homologySYNOPSIS
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DESCRIPTION
Bio::Tools::Run::PiseApplication::homologyBioperl class for: homology SCMF Homology Modelling Program (P. Koehl, M. Delarue) References: P. Koehl and M. Delarue. Nature Structural Biology. 2:163-169 (1995). Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/homology.html for available values): homology (String) pdbfile (InFile) PDB data for the template protein pipe: pdbfile model_name (String) Name of the model protein to be built alignment (Sequence) Pairwise sequence alignment of template and model (MSF format preferred) pipe: readseq_ok_alig cycles (Float) Total number of cycles for SCMF refinement lambda (Float) Lambda for SCMF updates
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR
Catherine Letondal (letondal@pasteur.fr)COPYRIGHT
Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided ``as is'' without warranty of any kind.SEE ALSO
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- http://bioweb.pasteur.fr/seqanal/interfaces/homology.html
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- Bio::Tools::Run::PiseApplication
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- Bio::Tools::Run::AnalysisFactory::Pise
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- Bio::Tools::Run::PiseJob
new
Title : new() Usage : my $homology = Bio::Tools::Run::PiseApplication::homology->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::homology object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $homology = $factory->program('homology'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::homology.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre