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Bio::Tools::Run::PiseApplication::pepinfo.3pm
Langue: en
Version: 2008-11-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Tools::Run::PiseApplication::pepinfoSYNOPSIS
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DESCRIPTION
Bio::Tools::Run::PiseApplication::pepinfoBioperl class for: PEPINFO Plots simple amino acid properties in parallel (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/pepinfo.html for available values): pepinfo (String) init (String) inseq (Sequence) inseq -- protein [single sequence] (-inseq) pipe: seqfile graph (Excl) graph (-graph) outfile (OutFile) outfile (-outfile) generalplot (Switch) plot histogram of general properties (-generalplot) hydropathyplot (Switch) plot graphs of hydropathy (-hydropathyplot) hwindow (Integer) Window size for hydropathy averaging (-hwindow) aaproperties (String) Enter user defined file of amino acid properties or leave blank (-aaproperties) aahydropathy (String) Enter user defined file of hydropathy data or leave blank (-aahydropathy) auto (String) psouput (String)
FEEDBACK
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR
Catherine Letondal (letondal@pasteur.fr)COPYRIGHT
Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided ``as is'' without warranty of any kind.SEE ALSO
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- http://bioweb.pasteur.fr/seqanal/interfaces/pepinfo.html
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- Bio::Tools::Run::PiseApplication
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- Bio::Tools::Run::AnalysisFactory::Pise
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- Bio::Tools::Run::PiseJob
new
Title : new() Usage : my $pepinfo = Bio::Tools::Run::PiseApplication::pepinfo->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::pepinfo object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $pepinfo = $factory->program('pepinfo'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::pepinfo.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre