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GO::Model::Seq.3pm
Langue: en
Version: 2009-11-06 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
NAME
GO::Model::Seq - biological sequence
SYNOPSIS
print $gene_product->seq->seq;
DESCRIPTION
represents a biological sequence; uses the bioperl Bio::PrimarySeq classany call that you can do on a bioperl sequence object, you can do here, with the addition of the calls below
to get bioperl, see http://www.bioperl.org
pseq
Usage - Returns - Bio::PrimarySeq Args -
md5checksum
Usage - my $md5 = $seq->md5checksum() OR $seq->md5checksum($md5) Returns - 32 char hex string Args - 32 char hex string [optional]
checksum for seq - easy way to check if it has been changed etc
(requires Digest::MD5 module from CPAN)
to_fasta
Usage - Returns - Args -
add_xref
- Usage : $term->add_xref($xref); - Args : GO::Term::Xref
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