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Langue: en

Version: 2009-03-10 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME - index sequence files using Bio::DB::Flat


  Create or update a biological sequence database indexed with the
  Bio::DB::Flat indexing scheme.  The arguments are a list of flat files
  containing the sequence information to be indexed.

USAGE <options> file1 file2 file3...
      --create              Create or reinitialize the index.  If not specified,
                            the index must already exist.
      --format   <format>   The format of the sequence files.  Must be one
                            of "genbank", "swissprot", "embl" or "fasta".
      --location <path>     Path to the directory in which the index files
                            are stored.
      --dbname <name>       The symbolic name of the database to be created.
      --indextype <type>    Type of index to create.  Either "bdb" or "flat".
                            "binarysearch" is the same as "flat".

Options can be abbreviated. For example, use -i for --indextype.

The following environment variables will be used as defaults if the corresponding options are not provided:

      OBDA_FORMAT      format of sequence file
      OBDA_LOCATION    path to directory in which index files are stored
      OBDA_DBNAME      name of database
      OBDA_INDEX       type of index to create
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17:40 17:39 La banque de france ?