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bp_dbsplit.pl

NAME

dbsplit - script to split an input set of database(s) into smaller pieces

SYNOPSIS

   dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
               [--prefix outputprefix] [ < file1 file 2  OR file1 file2]
 
 

DESCRIPTION

This script will take as input a list of filenames or a single file or from STDIN a sequence database and split the database into separate files of X numbers of sequences. You specify X with the "--size/-s" parameter. The input and output sequence format is any that is supported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).

You can specify the input data either as a single file with -i filename, or as a single file as an argument like

   % dbsplit file1 file2
 
 

or as a list of sequence data with

   % cat file1 file2 file3 | dbsplit
 
 

You'll want to use the "--prefix" to specify what the output prefix will be.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

   http://bugzilla.open-bio.org/
 
 

AUTHOR

Jason Stajich, jason-at-bioperl-dot-org