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bp_seqretsplit.1p

Langue: en

Version: 2009-03-10 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

seqretsplit - split a sequence (or stream) into a single file per sequence

SYNOPSIS

   seqretsplit file1 file2 .. 
   # or
   seqretsplit < file1
 
 

DESCRIPTION

The script will split all sequences from fasta file(s) (or stdin) to individual files. The filename is the sequence ID (everything before the 1st whitespace in a FASTA header). Currently it doesn't check to see that it isn't overwriting an existing file so IDs should be unique

This is inspired by EMBOSS seqretsplit tool.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
     http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

http://bugzilla.open-bio.org/

AUTHOR

Jason Stajich <jason_AT_bioperl_DOT_org>
Nous vivons trop dans les livres et pas assez dans la nature,
et nous ressemblons à ce niais de Pline le Jeune qui étudiait
un orateur grec pendant que sous ses yeux le Vésuve engloutissait
cinq villes sous la cendre.
-+- Jacques Anatole François Thibault dit Anatole France
(1844-1924) -+-