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bp_tree2pag.1p

NAME

tree2pag - convert Bio::TreeIO parseable format trees to pagel format

SYNOPSIS

  tree2pag -if nexus -i file.nexus > file.pag
 
  # OR pipe in through STDIN, and use newick format instead
 
  cat file.newick | tree2pag -if newick > file.nh
 
  # OR specify an output and input
 
  tree2pag -o file.pag -i file.newick
 
 

DESCRIPTION

Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.