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bp_tree2pag.pl

Langue: en

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Version: 2009-02-27 (fedora - 04/07/09)

Section: 1 (Commandes utilisateur)

NAME

tree2pag - convert Bio::TreeIO parseable format trees to pagel format

SYNOPSIS

  tree2pag -if nexus -i file.nexus > file.pag
 
  # OR pipe in through STDIN, and use newick format instead
 
  cat file.newick | tree2pag -if newick > file.nh
 
  # OR specify an output and input
 
  tree2pag -o file.pag -i file.newick
 
 

DESCRIPTION

Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.
Kiwi fade, aptéryx, quel jambon vous gâchez !
-- Zalmanski, Alain