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gp_gc

Langue: en

Version: 111682 (mandriva - 01/05/08)

Section: 1 (Commandes utilisateur)

NAME

gp_gc - 1

SYNOPSIS

gp_gc [-m] [-q] [-v] [-d] [-h] [inputfile] [outputfile]

OPTIONS

-m
Computates only a total mean and variance for all read sequences.
-v
Prints the version information.
-d
Prints lots of debugging information.
-h
Shows usage information.
inputfile
File to process, use - to instruct yodl to read from stdin.

DESCRIPTION

gp_gc prints out the GC contents of a DNA or RNA sequence.

EXAMPLES

o
To computate the GC contents of a sequence contained in the file orf.fasta, type
gp_gc orf.fasta
o
To computate a mean GC contents of all sequences contained in the file all.orfs.seq, type
gp_gc -m all.orfs.seq

SEE ALSO

Genpak(1) gp_acc(1) gp_adjust(1) gp_cdndev(1) gp_cusage(1) gp_digest(1) gp_dimer(1) gp_findorf(1) gp_getseq(1) gp_map(1) gp_matrix(1) gp_mkmtx(1) gp_pattern(1) gp_primer(1) gp_qs(1) gp_randseq(1) gp_seq2prot(1) gp_slen(1) gp_tm(1) gp_trimer(1)

DIAGNOSTICS

All Genpak programs complain in situations you would also complain, like when they cannot find a sequence you gave them or the sequence is not valid.

The Genpak programs do not write over existing files. I have found this feature very useful :-)

BUGS

I'm sure there are plenty left, so please mail me if you find them. I tried to clean up every bug I could find.

AUTHOR

January Weiner III <january@bioinformatics.org>

Quand on aime, ou bien l'on n'a point de peine, ou bien l'on aime
jusqu'à sa peine.
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