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Version: 371943 (fedora - 01/12/10)

Section: 1 (Commandes utilisateur)


hmmconvert - convert profile file to a HMMER format


hmmconvert [options] <hmmfile>


The hmmconvert utility converts an input profile file to different HMMER formats.

By default, the input profile can be in any HMMER format, including old/obsolete formats from HMMER2, ASCII or binary; the output profile is a current HMMER3 ASCII format.


Help; print a brief reminder of command line usage and all available options.
Output profiles in ASCII text format. This is the default.
Output profiles in binary format.
Output in legacy HMMER2 ASCII text format, in ls (glocal) mode. This allows HMMER3 models to be converted back to a close approximation of HMMER2, for comparative studies.
--outfmt <s>
Output in a HMMER3 ASCII text format other then the most current one. Valid choices for <s> are 3/b or 3/a. The current format is 3/b, and this is the default. There is a slightly different format 3/a that was used in some alpha test code.


See hmmer(1) for a master man page with a list of all the individual man pages for programs in the HMMER package.

For complete documentation, see the user guide that came with your HMMER distribution (Userguide.pdf); or see the HMMER web page (@HMMER_URL@).


For additional information on copyright and licensing, see the file called COPYRIGHT in your HMMER source distribution, or see the HMMER web page (@HMMER_URL@).


 Eddy/Rivas Laboratory
 Janelia Farm Research Campus
 19700 Helix Drive
 Ashburn VA 20147 USA



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