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micro_razers
Langue: en
Version: 338096 (ubuntu - 24/10/10)
Section: 1 (Commandes utilisateur)
NAME
MicroRazerS - Rapid Alignment of Small RNA ReadsSYNOPSIS
micro_razers [OPTION]... <GENOME FILE> <READS FILE>DESCRIPTION
MicroRazerS - Rapid Alignment of Small RNA ReadsMain Options:
- -o, --output FILE
- change output filename (default <READS FILE>.result)
- -sL, --seed-length NUM
- seed length (default 16)
- -sE, --seed-error
- allow for one error in the seed (default off)
- -rr, --recognition-rate
- set lower bound of sensitivity level for one-error matches (default 100)
- -f, --forward
- only compute forward matches
- -r, --reverse
- only compute reverse complement matches
- -mN, --match-N
- 'N' matches with all other characters
- -m, --max-hits NUM
- output only NUM of the best hits (default 100)
- -pa, --purge-ambiguous
- purge reads with more than max-hits best matches
- -lm, --low-memory
- may decrease memory usage at the expense of runtime
- -v, --verbose
- verbose mode
- -vv, --vverbose
- very verbose mode
- -V, --version
- print version number
- -h, --help
- print this help
Output Format Options:
- -a, --alignment
- dump the alignment for each match
- -gn, --genome-naming NUM
- select how genomes are named 0 = use Fasta id (default) 1 = enumerate beginning with 1
- -rn, --read-naming NUM
- select how reads are named 0 = use Fasta id (default) 1 = enumerate beginning with 1 2 = use the read sequence (only for short reads!)
- -so, --sort-order NUM
- select how matches are sorted 0 = 1. read number, 2. genome position (default) 1 = 1. genome position, 2. read number
- -pf, --position-format
- 0 = gap space (default) 1 = position space
AUTHOR
MicroRazerSwas written by Anne-Katrin Emde.
This manual page was generated using html2man and polished by Soeren Sonnenburg <sonne@debian.org>, for the Debian project (but may be used by others).
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre