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palindrome.1e

NAME

palindrome - Looks for inverted repeats in a nucleotide sequence

SYNOPSIS

palindrome -sequence seqall -minpallen integer -maxpallen integer -gaplimit integer -nummismatches integer -outfile outfile -overlap boolean

palindrome -help

DESCRIPTION

palindrome

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Nucleic:Repeats" command group(s).

OPTIONS

Input section

-sequence seqall

Required section

-minpallen integer

Default value: 10

-maxpallen integer

Default value: 100

-gaplimit integer

Default value: 100

-nummismatches integer

Output section

-outfile outfile

-overlap boolean

Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

palindrome is fully documented via the tfm(1) system.

AUTHOR

Debian EMBOSS Packaging Team <pkg-emboss-devel@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

Copyright © 2007 Debian EMBOSS Packaging Team

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.