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tree_recon
Langue: en
Version: September 2009 (ubuntu - 24/10/10)
Section: 1 (Commandes utilisateur)
NAME
Version - Tree reconstrucionSYNOPSIS
tree_recon -m <Phylip distance matrix> [Options]DESCRIPTION
Tree reconstrucion - TreeRecon- -h, --help
- displays this help message
- -V, --version
- print version information
Main Options:
- -m, --matrix <Phylip distance matrix>
- file with distance matrix At least 3 species required.
- -b, --build [nj, min, max, avg, wavg]
- tree building method (default nj) nj = Neighbor-joining min = UPGMA single linkage max = UPGMA complete linkage avg = UPGMA average linkage wavg = UPGMA weighted average linkage
- Neighbor-joining creates an unrooted tree. We root that tree at the last joined pair.
- -o, --outfile <Filename>
- output filename (default tree.dot)
- -f, --format [dot | newick]
- output format (default dot)
AUTHOR
tree_recon was written by Tobias Rausch.
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