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Langue: en

Version: September 2009 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)


Version - Tree reconstrucion


tree_recon -m <Phylip distance matrix> [Options]


Tree reconstrucion - TreeRecon
-h, --help
displays this help message
-V, --version
print version information

Main Options:

-m, --matrix <Phylip distance matrix>
file with distance matrix At least 3 species required.
-b, --build [nj, min, max, avg, wavg]
tree building method (default nj) nj = Neighbor-joining min = UPGMA single linkage max = UPGMA complete linkage avg = UPGMA average linkage wavg = UPGMA weighted average linkage
Neighbor-joining creates an unrooted tree. We root that tree at the last joined pair.
-o, --outfile <Filename>
output filename (default
-f, --format [dot | newick]
output format (default dot)


tree_recon was written by Tobias Rausch.

This manual page was generated using html2man and polished by Soeren Sonnenburg <>, for the Debian project (but may be used by others).

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