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velveth

Langue: en

Autres versions - même langue

Version: May 2010 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)

NAME

velveth - simple hashing program

DESCRIPTION

velveth - simple hashing program Version 0.7.61

OPTIONS

-strand_specific
: for strand specific transcriptome sequencing data (default: off)

Output:

directory/Roadmaps directory/Sequences
[Both files are picked up by graph, so please leave them there]

Version 0.7.61

-strand_specific
: for strand specific transcriptome sequencing data (default: off)

Output:

directory/Roadmaps directory/Sequences
[Both files are picked up by graph, so please leave them there]
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31

Usage: ./velveth directory hash_length {[-file_format][-read_type] filename} [options]

directory
: directory name for output files
hash_length
: odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)
filename
: path to sequence file or - for standard input

File format options:

-fasta
-fastq
-fasta.gz
-fastq.gz
-sam
-bam
-eland
-gerald

Read type options:

-short
-shortPaired
-short2
-shortPaired2
-long
-longPaired
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31

Usage: ./velveth directory hash_length {[-file_format][-read_type] filename} [options]

directory
: directory name for output files
hash_length
: odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)
filename
: path to sequence file or - for standard input

File format options:

-fasta
-fastq
-fasta.gz
-fastq.gz
-sam
-bam
-eland
-gerald

Read type options:

-short
-shortPaired
-short2
-shortPaired2
-long
-longPaired
S A T O R
A R E P O
T E N E T
O P E R A
R O T A S
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