velveth

Langue: en

Autres versions - même langue

Version: June 2009 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

Sommaire

NAME

velveth - simple hashing program

DESCRIPTION

velveth - simple hashing program Version 0.7.34

Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk) This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Usage: ./velveth directory hash_length {[-file_format][-read_type] filename}

directory
: directory name for output files
hash_length
: odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)

File format options:

-fasta
-fastq
-fasta.gz
-fastq.gz
-eland
-gerald

Read type options:

-short
-shortPaired
-short2
-shortPaired2
-long
-longPaired

Output:

directory/Roadmaps directory/Sequences
[Both files are picked up by graph, so please leave them there]

Version 0.7.34

Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk) This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Usage: ./velveth directory hash_length {[-file_format][-read_type] filename}

directory
: directory name for output files
hash_length
: odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)

File format options:

-fasta
-fastq
-fasta.gz
-fastq.gz
-eland
-gerald

Read type options:

-short
-shortPaired
-short2
-shortPaired2
-long
-longPaired

Output:

directory/Roadmaps directory/Sequences
[Both files are picked up by graph, so please leave them there]