Bio::Biblio::MedlineArticle.3pm

Langue: en

Version: 2010-04-29 (fedora - 01/12/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::Biblio::MedlineArticle - Representation of a MEDLINE article

SYNOPSIS

   $obj = Bio::Biblio::MedlineArticle->new(-mesh_headings =>
                                             #array ref of hashes
                                          );
 
   # how are Mesh terms stored:
   use Data::Dumper;
   print Data::Dumper->Dump ( [$obj->mesh_headings], ['MeshHeadings']);
 
   #It produces (something like) this:
   #'MeshHeadings' => [
   #       { 'descriptorName' => 'Adult' },
   #       { 'descriptorName' => 'Cardiovascular Diseases',
   #         'subHeadings'    => [ { 'subHeading' => 'etiology' },
   #                               { 'majorTopic' => 'Y',
   #                                 'subHeading' => 'mortality' } ] },
   #       { 'descriptorName' => 'Child Development',
   #         'subHeadings'    => [ { 'majorTopic' => 'Y',
   #                                 'subHeading' => 'physiology' } ] },
   #       { 'descriptorName' => 'Human' },
   #      ]
 
 

DESCRIPTION

A storage object for a MEDLINE article. See its place in the class hierarchy in http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif

Attributes

The following attributes are specific to this class (however, you can also set and get all attributes defined in the parent classes):
   affiliation
   chemicals                      type: array ref of hashes
   citation_owner
   comment_ins                    type: array ref of hashes
   comment_ons                    type: array ref of hashes
   date_of_electronic_publication
   erratum_fors                   type: array ref of hashes
   erratum_in                     type: array ref of hashes
   gene_symbols
   general_notes                  type: array ref of hashes
   grant_list_complete
   grants                         type: array ref of hashes
   medline_date
   medline_id
   medline_page
   mesh_headings                  type: array ref of hashes
   number_of_references
   original_report_ins            type: array ref of hashes
   other_abstracts                type: array ref of hashes
   other_ids                      type: array ref of hashes
   other_languages
   pmid
   republished_froms              type: array ref of hashes
   republished_ins                type: array ref of hashes
   retraction_ins                 type: array ref of hashes
   retraction_ofs                 type: array ref of hashes
   season
   status
   summary_for_patients_ins       type: array ref of hashes
   update_ins                     type: array ref of hashes
   update_ofs                     type: array ref of hashes
   vernacular_title
 
 

SEE ALSO

*
OpenBQS home page: http://www.ebi.ac.uk/~senger/openbqs/
*
Comments to the Perl client: http://www.ebi.ac.uk/~senger/openbqs/Client_perl.html

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHORS

Heikki Lehvaslaiho (heikki-at-bioperl-dot-org), Martin Senger (senger@ebi.ac.uk) Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER

This software is provided ``as is'' without warranty of any kind.