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Bio::Expression::FeatureI.3pm

NAME

Bio::Expression::FeatureI - an interface class for DNA/RNA features

SYNOPSIS

Do not use this module directly

DESCRIPTION

This provides a standard bioperl interface class for representing DNA and RNA features. It cannot be instantiated directly, but serves as an abstract base class for implementors.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

   http://bugzilla.open-bio.org/
 
 

AUTHOR

Allen Day <allenday@ucla.edu>

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

quantitation()

   Title   : value
   Usage   : $val = $ftr->quantitation()
   Function: get/set the feature's quantitation
   Returns : A numeric value
   Args    : a new numeric value (optional)
 
 

quantitation_units()

   Title   : quantitation_units
   Usage   : $units = $ftr->quantitation_units()
   Function: get/set the units of the feature's quantitation
   Returns : A string or undef
   Args    : a new string (optional)
 
 

standard_deviation()

   Title   : standard_deviation
   Usage   : $std_dev = $ftr->standard_deviation()
   Function: get/set the feature's standard deviation of quantitation()
   Returns : A numeric value
   Args    : a new numeric value (optional)
   Comments: no calculation is done here
 
 

sample_count()

   Title   : sample_count
   Usage   : $sample_count = $ftr->sample_count()
   Function: get/set the number of samples used to calculate
             quantitation()
   Returns : An integer
   Args    : a new integer (optional)