Bio::LiveSeq::DNA.3pm

Langue: en

Version: 2009-03-10 (debian - 07/07/09)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::LiveSeq::DNA - DNA object for LiveSeq

SYNOPSIS

   # documentation needed
 
 

DESCRIPTION

This holds the DNA sequence (or the RNA in the case of cDNA entries) and is accessed by exons, genes, transcripts... objects

AUTHOR - Joseph A.L. Insana

Email: Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

   Title   : new
   Usage   : $dna = Bio::LiveSeq::DNA->new(-seq => "atcgaccaatggacctca",
                                           -offset => 3 );
 
   Function: generates a new Bio::LiveSeq::DNA
   Returns : reference to a new object of class DNA
   Errorcode -1
   Args    : a string
         AND an optional offset to create nucleotide labels (default is 1, i.e.
             starting the count of labels from "1") -> do not bother using it ->
             it could be used by alternative loaders !EMBL format
   NOTE    : strand of DNA is set to 1 by default