Bio::Location::WidestCoordPolicy.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::Location::WidestCoordPolicy - class implementing Bio::Location::CoordinatePolicy as the widest possible and reasonable range

SYNOPSIS

See Bio::Location::CoordinatePolicyI

DESCRIPTION

CoordinatePolicyI implementing objects are used by Bio::LocationI implementing objects to determine integer-valued coordinates when asked for it.

This class will compute the coordinates such that always the widest possible range is returned, but by using some common sense. This means that e.g. locations like ``<5..100'' (start before position 5) will return 5 as start (returned values have to be positive integers).

FEEDBACK

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Hilmar Lapp, Jason Stajich

Email <hlapp-at-gmx-dot-net>, <jason-at-bioperl-dot-org>

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

start

   Title   : start
   Usage   : $start = $policy->start($location);
   Function: Get the integer-valued start coordinate of the given location as
             computed by this computation policy.
   Returns : A positive integer number.
   Args    : A Bio::LocationI implementing object.
 
 

end

   Title   : end
   Usage   : $end = $policy->end($location);
   Function: Get the integer-valued end coordinate of the given location as
             computed by this computation policy.
   Returns : A positive integer number.
   Args    : A Bio::LocationI implementing object.