Bio::Map::LinkagePosition.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::Map::LinkagePosition - Create a Position for a Marker that will be placed          on a Bio::Map::LinkageMap

SYNOPSIS

     use Bio::Map::Position;
     my $position = Bio::Map::LinkagePosition->new(-positions => 1,
                                                  -distance => 22.1 );
 
         # can get listing of positions
     my @positions = $position->each_position;
 
 

DESCRIPTION

Position for a Bio::Map::MarkerI compliant object that will be placed on a Bio::Map::LinkageMap. See Bio::Map::MarkerI and Bio::Map::LinkageMap for details

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Chad Matsalla

Email bioinformatics1@dieselwurks.com

CONTRIBUTORS

Lincoln Stein, lstein@cshl.org Heikki Lehvaslaiho, heikki-at-bioperl-dot-org Jason Stajich jason@bioperl.org Sendu Bala bix@sendu.me.uk

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

  Title   : new
  Usage   : my $obj = Bio::Map::LinkagePosition->new(-positions => $position,
                                                                    -distance => $distance);
  Function: Builds a new Bio::Map::LinkagePosition object
  Returns : Bio::Map::LinkagePosition
  Args    : -order => the relative order of this marker on a linkage map
                -positions => positions on a map
 
 

Bio::Map::PositionI methods

order

  Title   : order
  Usage   : $o_position->order($order)
            my $order = $o_position->order()
  Function: get/set the order position of this position in a map
  Returns : int
  Args    : none to get, int to set