Bio::Tools::AlignFactory.3pm

Langue: en

Autres versions - même langue

Version: 2009-03-10 (debian - 07/07/09)

Section: 3 (Bibliothèques de fonctions)

Sommaire

NAME

Bio::Tools::AlignFactory - Base object for alignment factories

SYNOPSIS

You wont be using this as an object, but using a dervied class like Bio::Tools::pSW

DESCRIPTION

Holds common Alignment Factory attributes in place

CONTACT

http://bio.perl.org/ or birney@sanger.ac.uk

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

kbyte

  Title     : kbyte()
  Usage     : set/gets the amount of memory able to be used
  Function  : 
            : $factory->kbyte(200);
            :
  Returns   : 
  Argument  : memory in kilobytes

report

  Title     : report()
  Usage     : set/gets the report boolean to issue reports or not
  Function  : 
            : $factory->report(1); # reporting goes on
            :
  Returns   : n/a
  Argument  : 1 or 0

set_memory_and_report

  Title   : set_memory_and_report
  Usage   : Only used by subclasses.
  Function:
  Example :
  Returns : 
  Args    :