Bio::Tools::Blat.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::Tools::Blat - parser for Blat program

SYNOPSIS

   use Bio::Tools::Blat;
   my $blat_parser = Bio::Tools::Blat->new(-fh =>$filehandle );
   while( my $blat_feat = $blat_parser->next_result ) {
         push @blat_feat, $blat_feat;
   }
 
 

DESCRIPTION

  Parser for Blat program
 
 

FEEDBACK

Mailing Lists

  User feedback is an integral part of the evolution of this and other
  Bioperl modules. Send your comments and suggestions preferably to
  the Bioperl mailing list.  Your participation is much appreciated.
 
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

  Report bugs to the Bioperl bug tracking system to help us keep track
  of the bugs and their resolution. Bug reports can be submitted the
  web:
 
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Balamurugan Kumarasamy

  Email: bala@tll.org.sg
 
 

APPENDIX

  The rest of the documentation details each of the object methods.
  Internal methods are usually preceded with a _
 
 

new

  Title   : new
  Usage   : my $obj = Bio::Tools::Blat->new(-fh=>$filehandle);
  Function: Builds a new Bio::Tools::Blat object
  Returns : Bio::Tools::Blat
  Args    : -filename
            -fh (filehandle)
 
 

next_result

  Title   : next_result
  Usage   : my $feat = $blat_parser->next_result
  Function: Get the next result set from parser data
  Returns : L<Bio::SeqFeature::Generic>
  Args    : none
 
 

create_feature

  Title   : create_feature
  Usage   : my $feat=$blat_parser->create_feature($feature,$seqname)
  Function: creates a SeqFeature Generic object
  Returns : L<Bio::SeqFeature::Generic>
  Args    :