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asnval
Langue: en
Version: 110415 (mandriva - 01/05/08)
Section: 1 (Commandes utilisateur)
NAME
asnval - validate ASN.1 biological sequence recordsSYNOPSIS
asnval [-] [-A] [-C N] [-E str] [-G] [-J] [-L filename] [-M] [-P N] [-Q N] [-R N] [-S N] [-T] [-X] [-Y] [-Z] [-a type] [-b] [-c] [-e] [-i filename] [-k] [-l] [-o filename] [-p path] [-r] [-u] [-v N] [-x str]DESCRIPTION
asnval is a command-line tool to validate ASN.1-format biological sequence records.OPTIONS
A summary of options is included below.- -
- Print usage message
- -A
- Validate Alignments
- -C N
- Max count
- -E str
- Only Error Code to Show
- -G
- GI lookup from accession
- -J
- Require ISO-JTA?
- -L filename
- Log File
- -M
- Match locus_tag against General ID
- -P N
- Highest severity for error to show:
-
- 0
- none
- 1
- informational
- 2
- warning
- 3
- error (default for -Q)
- 4
- grounds for rejection (default for -P, -R)
-
- -Q N
- Lowest severity for error to show, per P
- -R N
- Severity for error in return code, per P
- -S N
- Skip count
- -T
- Use Threads
- -X
- Exon splice check
- -Y
- Check against old IDs
- -Z
- Remote CDS product fetch
- -a type
- Input ASN.1 type:
-
- a
- Any (autodetected; default)
- e
- seq-Entry
- b
- Bioseq
- s
- bioseq-Set
- m
- seq-subMit
- t
- baTch bioseq-set
- u
- batch seq-sUbmit
-
- -b
- Batch file is Binary
- -c
- Batch file is Compressed
- -e
- Ignore transcription/translation Exceptions
- -i filename
- Single input file (standard input by default)
- -k
- Local fetching
- -l
- Lock components in advance
- -o filename
- Single output file
- -p path
- Path to ASN.1 Files [String]
- -r
- Remote Fetching from ID
- -u
- Recurse
- -v N
- Verbosity, from 0 (default) to 3
- -x str
- File selection substring (.ent by default)
AUTHOR
The National Center for Biotechnology Information.SEE ALSO
cleanasn(1), sequin(1).Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre