insdseqget

Langue: en

Version: 111975 (mandriva - 01/05/08)

Section: 1 (Commandes utilisateur)

NAME

insdseqget - format sequences from GenBank as an XML INSDSet

SYNOPSIS

insdseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o filename] [-v]

DESCRIPTION

insdseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML INSDSet document.

OPTIONS

A summary of options is included below.
-
Print usage message
-d filename
Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line)
-i filename
Input file name for GI list (default = stdin)
-m n/p/b
Molecule type:
n
Nucleotide (default)
p
Protein
b
Both
-n
Return only new records (for which the given GI refers to an old version)
-o filename
Output file name for the XML INSDSet (default = stdout)
-v
Fetch SNP Variations

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2gb(1), gbseqget(1).