Rechercher une page de manuel
Bio::AlignIO::po.3pm
Langue: en
Version: 2009-03-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::AlignIO::po - po MSA Sequence input/output streamSYNOPSIS
Do not use this module directly. Use it via the Bio::AlignIO class.DESCRIPTION
This object can transform Bio::SimpleAlign objects to and from 'po' format flat file databases. 'po' format is the native format of the POA alignment program (Lee C, Grasso C, Sharlow MF, 'Multiple sequence alignment using partial order graphs', Bioinformatics (2002), 18(3):452-64).FEEDBACK
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHORS - Matthew Betts
Email: matthew.betts@ii.uib.noAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _next_aln
Title : next_aln Usage : $aln = $stream->next_aln() Function: returns the next alignment in the stream. Returns : L<Bio::Align::AlignI> object - returns undef on end of file or on error Args : NONE
write_aln
Title : write_aln Usage : $stream->write_aln(@aln) Function: writes the $aln object into the stream in po format Returns : 1 for success and 0 for error Args : L<Bio::Align::AlignI> object
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre