Rechercher une page de manuel
Bio::DB::GDB.3pm
Langue: en
Version: 2008-06-24 (ubuntu - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::DB::GDB - Database object interface to GDB HTTP querySYNOPSIS
use Bio::DB::GDB; $gdb = new Bio::DB::GDB; $info = $gdb->get_info(-type => 'marker', -id => 'D1S243'); # Marker name print "genbank id is ", $info->{'gdbid'}, "\nprimers are (fwd, rev) ", join(",", @{$info->{'primers'}}), "\nproduct length is ", $info->{'length'}, "\n";
DESCRIPTION
This class allows connections to the Genome Database (GDB) and queries to retrieve any database objects. See http://www.gdb.org/ or any mirror for details.FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ua
Title : ua Usage : my $ua = $self->ua or $self->ua($ua) Function: Get/Set a LWP::UserAgent for use Returns : reference to LWP::UserAgent Object Args : $ua - must be a LWP::UserAgent
get_params
Title : get_params Usage : my %params = $self->get_params($mode) Function: Returns key,value pairs to be passed to query for mode ('marker', 'gene') Returns : a key,value pair hash Args : 'marker' or 'gene' mode for retrieval
get_info
Title : get_info Usage : my $info = $self->get_info(-type => 'marker', -id => 'D1S234'); Function: Returns key,value pairs specific Returns : a key,value pair hash Args : -type => 'marker' or 'gene' mode for retrieval -id => unique id to query for
get_request
Title : get_request Usage : my $url = $self->get_request Function: HTTP::Request Returns : Args : %qualifiers = a hash of qualifiers (ids, format, etc)
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre