Bio::Graphics::Glyph::redgreen_segment.3pm

Langue: en

Autres versions - même langue

Version: 2008-06-24 (ubuntu - 08/07/09)

Section: 3 (Bibliothèques de fonctions)

Sommaire

NAME

Bio::Graphics::Glyph::redgreen_segments - The "redgreen_segments" glyph

SYNOPSIS

See Bio::Graphics::Panel and Bio::Graphics::Glyph.

DESCRIPTION

This glyph is similar to the graded_segments glyph except that it generates a green->red gradient suitable for use with microarray data. A feature score of 0 is full green; a feature score of 1.0 is full red; intermediate scores are shades of yellow.

OPTIONS

The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.

   Option      Description                      Default
   ------      -----------                      -------
 
   -fgcolor      Foreground color               black
 
   -outlinecolor Synonym for -fgcolor
 
   -bgcolor      Background color               turquoise
 
   -fillcolor    Synonym for -bgcolor
 
   -linewidth    Line width                     1
 
   -height       Height of glyph                10
 
   -font         Glyph font                     gdSmallFont
 
   -connector    Connector type                 0 (false)
 
   -connector_color
                 Connector color                black
 
   -label        Whether to draw a label        0 (false)
 
   -description  Whether to draw a description  0 (false)

BUGS

Please report them.

SEE ALSO

Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

AUTHOR

Lincoln Stein <lstein@cshl.org>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.