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Bio::Ontology::SimpleGOEngine.3pm
Langue: en
Version: 2008-06-24 (ubuntu - 08/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::Ontology::SimpleGOEngine - a Ontology Engine for GO implementing OntologyEngineISYNOPSIS
use Bio::Ontology::SimpleGOEngine; my $parser = Bio::Ontology::SimpleGOEngine->new ( -defs_file => "/home/czmasek/GO/GO.defs", -files => ["/home/czmasek/GO/component.ontology", "/home/czmasek/GO/function.ontology", "/home/czmasek/GO/process.ontology"] ); my $engine = $parser->parse(); my $IS_A = Bio::Ontology::RelationshipType->get_instance( "IS_A" ); my $PART_OF = Bio::Ontology::RelationshipType->get_instance( "PART_OF" ); my $RELATED_TO = Bio::Ontology::RelationshipType->get_instance( "RELATED_TO" );
DESCRIPTION
This class is deprecated and instead Bio::Ontology::OBOEngine should be used.Needs Graph.pm from CPAN.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing lists Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
AUTHOR
Christian M. ZmasekEmail: czmasek@gnf.org or cmzmasek@yahoo.com
WWW: http://www.genetics.wustl.edu/eddy/people/zmasek/
Address:
Genomics Institute of the Novartis Research Foundation 10675 John Jay Hopkins Drive San Diego, CA 92121
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre