Bio::PopGen::GenotypeI.3pm

Langue: en

Version: 2010-05-19 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

NAME

Bio::PopGen::GenotypeI - A marker and alleles for a specific individual

SYNOPSIS

Give standard usage here

DESCRIPTION

Describe the interface here

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Jason Stajich

Email jason-at-bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

marker_name

  Title   : marker_name
  Usage   : my $name = $genotype->marker_name();
  Function: Get the marker name for a genotype result
  Returns : string
  Args    : none
 
 

individual_id

  Title   : individual_id
  Usage   : my $indid = $genotype->individual_id();
  Function: Gets the individual id associated with a genotype
            This is effectively a back reference since we will typically
            associate a genotype with an individual with an 
            individual HAS-A genotype relationship.
  Returns : unique id string for an individual
  Args    : none
 
 

annotation

  Title   : annotation
  Usage   : my $annotation_collection = $genotype->annotation;
  Function: Get/set a Bio::AnnotationCollectionI for this genotype
  Returns : Bio::AnnotationCollectionI object
  Args    : [optional set] Bio::AnnotationCollectionI object
 
 

get_Alleles

  Title   : get_Alleles
  Usage   : my @alleles = $genotype->get_Alleles();
  Function: Get the alleles for a given marker and individual
  Returns : array of alleles (strings in many implementations)
  Args    : none