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Bio::PopGen::IndividualI.3pm
Langue: en
Version: 2010-05-19 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::PopGen::IndividualI - An individual who has Genotype or Sequence ResultsSYNOPSIS
# Get a Bio::PopGen::IndividualI somehow # test if it has alleles/genotypes for a given marker if( $ind->has_marker($markername) ) { } # get the unique id print $ind->unique_id, "\n"; # get the number of results (genotypes) print $ind->num_results;
DESCRIPTION
Describe the interface hereFEEDBACK
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Support
Please direct usage questions or support issues to the mailing list:bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason-at-bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _unique_id
Title : unique_id Usage : my $id = $individual->unique_id Function: Unique Identifier Returns : string representing unique identifier Args : string
num_genotypes
Title : num_genotypes Usage : my $count = $person->num_results; Function: returns the count of the number of Results for a person Returns : integer Args : none
annotation
Title : annotation Usage : my $annotation_collection = $ind->annotation; Function: Get/set a Bio::AnnotationCollectionI for this individual Returns : Bio::AnnotationCollectionI object Args : [optional set] Bio::AnnotationCollectionI object
get_Genotypes
Title : get_Genotypes Usage : my @genotypes = $ind->get_Genotypes(-marker => $markername); Function: Get the genotypes for an individual, based on a criteria Returns : Array of genotypes Args : either none (return all genotypes) or -marker => name of marker to return (exact match, case matters)
has_Marker
Title : has_Marker Usage : if( $ind->has_Marker($name) ) {} Function: Boolean test to see if an Individual has a genotype for a specific marker Returns : Boolean (true or false) Args : String representing a marker name
get_marker_names
Title : get_marker_names Usage : my @names = $individual->get_marker_names; Function: Returns the list of known marker names Returns : List of strings Args : none
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