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Bio::SeqIO::MultiFile.3pm

NAME

Bio::SeqIO::MultiFile - Treating a set of files as a single input stream

SYNOPSIS

    $seqin = Bio::SeqIO::MultiFile( '-format' => 'Fasta',
                                    '-files'  => ['file1','file2'] );
    while((my $seq = $seqin->next_seq)) {
        # do something with $seq
    }
 
 

DESCRIPTION

Bio::SeqIO::MultiFile provides a simple way of bundling a whole set of identically formatted sequence input files as a single stream.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

   http://bugzilla.open-bio.org/
 
 

AUTHOR - Ewan Birney

Email birney@ebi.ac.uk

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

next_seq

  Title   : next_seq
  Usage   :
  Function:
  Example :
  Returns :
  Args    :
 
 

next_primary_seq

  Title   : next_primary_seq
  Usage   :
  Function:
  Example :
  Returns :
  Args    :
 
 

_load_file

  Title   : _load_file
  Usage   :
  Function:
  Example :
  Returns :
  Args    :
 
 

_set_file

  Title   : _set_file
  Usage   :
  Function:
  Example :
  Returns :
  Args    :
 
 

_current_seqio

  Title   : _current_seqio
  Usage   : $obj->_current_seqio($newval)
  Function:
  Example :
  Returns : value of _current_seqio
  Args    : newvalue (optional)
 
 

_format

  Title   : _format
  Usage   : $obj->_format($newval)
  Function:
  Example :
  Returns : value of _format
  Args    : newvalue (optional)