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Bio::Tools::Run::PiseApplication::abiview.3pm
Langue: en
Version: 2008-11-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Tools::Run::PiseApplication::abiviewSYNOPSIS
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DESCRIPTION
Bio::Tools::Run::PiseApplication::abiviewBioperl class for: ABIVIEW Reads ABI file and display the trace (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/abiview.html for available values): abiview (String) init (String) fname (InFile) Name of the ABI trace file (-fname) outseq (OutFile) Sequence file (-outseq) pipe: seqfile outseq_sformat (Excl) Output format for: Sequence file graph (Excl) graph (-graph) startbase (Integer) First base to report or display (-startbase) endbase (Integer) Last base to report or display (-endbase) separate (Switch) Separate the trace graphs for the 4 bases (-separate) yticks (Switch) Display y-axis ticks (-yticks) sequence (Switch) Display the sequence on the graph (-sequence) window (Integer) Sequence display window size (-window) bases (String) Base graphs to be displayed (-bases) auto (String) psouput (String)
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR
Catherine Letondal (letondal@pasteur.fr)COPYRIGHT
Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided ``as is'' without warranty of any kind.SEE ALSO
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- http://bioweb.pasteur.fr/seqanal/interfaces/abiview.html
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- Bio::Tools::Run::PiseApplication
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- Bio::Tools::Run::AnalysisFactory::Pise
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- Bio::Tools::Run::PiseJob
new
Title : new() Usage : my $abiview = Bio::Tools::Run::PiseApplication::abiview->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::abiview object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $abiview = $factory->program('abiview'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::abiview.
Contenus ©2006-2024 Benjamin Poulain
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