Rechercher une page de manuel
Bio::Tools::Run::PiseApplication::saps.3pm
Langue: en
Version: 2008-11-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Tools::Run::PiseApplication::sapsSYNOPSIS
#
DESCRIPTION
Bio::Tools::Run::PiseApplication::sapsBioperl class for: SAPS Statistical Analysis of Protein Sequences (V. Brendel) References: Brendel, V., Bucher, P., Nourbakhsh, I., Blaisdell, B.E., Karlin, S. (1992) Methods and algorithms for statistical analysis of protein sequences. Proc. Natl. Acad. Sci. USA 89: 2002-2006. Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/saps.html for available values): saps (String) seq (Sequence) Protein sequence(s) File pipe: seqfile documented (Switch) Generate documented output (-d) terse (Switch) Generate terse output (-t) verbose (Switch) Generate verbose output (-v) table (Switch) Append computer-readable table summary output (-T) specie (Excl) Use this specie for quantile comparisons (-s) H_positive (Switch) Count H as positive charge (-H) analyze (String) Analyze spacings of amino acids X, Y, .... (-a)
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR
Catherine Letondal (letondal@pasteur.fr)COPYRIGHT
Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided ``as is'' without warranty of any kind.SEE ALSO
- •
- http://bioweb.pasteur.fr/seqanal/interfaces/saps.html
- •
- Bio::Tools::Run::PiseApplication
- •
- Bio::Tools::Run::AnalysisFactory::Pise
- •
- Bio::Tools::Run::PiseJob
new
Title : new() Usage : my $saps = Bio::Tools::Run::PiseApplication::saps->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::saps object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $saps = $factory->program('saps'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::saps.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre