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GO::Handlers::obj.3pm

NAME

   GO::Handlers::obj     - parses GO files into GO object model
 
 

SYNOPSIS

   use GO::Handlers::obj
 
 

DESCRIPTION

PUBLIC METHODS

graph

   Usage   - my $terms = $obj_handler->graph->get_all_terms;
   Synonym - g
   Synonym - ontology
   Returns - GO::Model::Graph object
   Args    -
 
 

as files are parsed, objects are created; depending on what kind of datatype is being parsed, the classes of the created objects will be different - eg GO::Model::Term, GO::Model::Association etc

the way to access all of thses is through the top level graph object

eg

   $parser = GO::Parser->new({handler=>'obj'});
   $parser->parse(@files);
   my $graph = $parser->graph;