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GO::IO::go_assoc.3pm
Langue: en
Version: 2009-11-06 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
NAME
GO::IO::go_assoc - dump GO terms as OBD XML
SYNOPSIS
my $apph = GO::AppHandle->connect(-d=>$go, -dbhost=>$dbhost); my $term = $apph->get_term({acc=>00003677}); #### ">-" is STDOUT my $out = new FileHandle(">-"); my $ga_out = GO::IO::go_assoc->new(-output=>$out); $ga_out->write_term($term);
OR:
my $apph = GO::AppHandle->connect(-d=>$go, -dbhost=>$dbhost); my $graph = $apph->get_node_graph(-acc=>00003677, -depth=>2); my $out = new FileHandle(">-"); my $ga_out = GO::IO::go_assoc->new(-output=>$out); $ga_out->write_graph($graph);
DESCRIPTION
Utility class to dump GO terms as OBD XML. Currently, you just call start_document, write_term for each term, then end_document.new
Usage - my $ga_out = new GO::IO::go_assoc(-output=>$out); Returns - Output emitter. Args - Output FileHandle
Initializes the writer object. To write to standard out, do:
my $out = new FileHandle(``>-''); my $ga_out = new GO::IO::go_assoc($out);
cgi_header
Usage - $ga_out->cgi_header; Returns - None Args - None
cgi_header prints the ``Content-type: text/plain'' statement. If creating a CGI script, you should call this before further action.
write_graph
Usage - $ga_out->write_graph(-graph=>$graph); Returns - None Args -graph=>$graph, -deep=>1 or 0, # optional, default 0. -qualifier=>1 or 0, # optional, default 1. -with=>1 or 0, # optional, default 1. -object_name=>1 or 0, # optional, default 1. -object_synonym=>1 or 0, # optional, default 1.
write_term_list
Usage - $ga_out->write_term_list(); Returns - None Args -term_listref=>$term_listref, -deep=>1 or 0, # optional, default 0. -qualifier=>1 or 0, # optional, default 1. -with=>1 or 0, # optional, default 1. -object_name=>1 or 0, # optional, default 1. -object_synonym=>1 or 0, # optional, default 1.
write_term
Usage - $ga_out->write_term(); Returns - None Args -term=>$term, -deep=>1 or 0, # optional, default 0. -qualifier=>1 or 0, # optional, default 1. -with=>1 or 0, # optional, default 1. -object_name=>1 or 0, # optional, default 1. -object_synonym=>1 or 0, # optional, default 1.
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