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GO::Model::Root.3pm

NAME

   GO::Model::Root - base class for all GO::Model objects
 
 

DESCRIPTION

base class for all GO::Model objects

Constructors

new

Constructor: Basically just calls _initialize(). Most subclasses should not need to override new, but instead should override _initialize().

If _initialize() fails , the procedure will die

WARNING: This procedure will die if initialization is unsuccessful. Use an eval statement to catch such exceptions.

obj_factory

   Usage   - $obj->obj_factory->create_new_term_object($h);
   Alias   - apph
   Returns - L<GO::ObjFactory>
   Args    - none
 
 

sprint_self

Prints out a description of the object to a string.

dump

dumps the object (can be read back in with eval)

namespace

   Usage   - print $term->namespace();     # getting the type
   Usage   - $term->namespace("molecular_function"); # setting the type
   Alias   - type
   Alias   - term_type
   Alias   - category
   Alias   - ontology
   Returns - string representing type
   Args    - string represnting type [optional]
 
 

The OBO namespace for the GO::Model::Term or GO::Model::Relationship

_cleanup

Called at object destruction time. Should be overridden to perform cleanup tasks.