GO::Parsers::go_xref_parser.3pm

Langue: en

Version: 2007-03-03 (debian - 07/07/09)

Section: 3 (Bibliothèques de fonctions)

Sommaire

NAME

   GO::Parsers::go_xref_parser     - syntax parsing of GO xref flat files (eg eg2go, metacyc2go)

SYNOPSIS

   do not use this class directly; use GO::Parser

DESCRIPTION

This generates Stag event streams from one of the various GO flat file formats (ontology, defs, xref, associations). See GO::Parser for details

Examples of these files can be found at http://www.geneontology.org

A description of the event streams generated follows; Stag or an XML handler can be used to catch these events

GO XREF FILES

These files have a filename *2go; eg metacyc2go 
   (dbxrefs
    (termdbxref+
      (termacc "s")
      (dbxref
        (xref_dbname "s")
        (xref_key "s"))))

AUTHOR