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SWISS::DTs.3pm

Name

SWISS::DTs

Description

SWISS::DTs represents the DT lines within an Swiss-Prot + TrEMBL entry as specified in the user manual http://www.expasy.org/sprot/userman.html .

Inherits from

SWISS::BaseClass.pm

Attributes

"CREATED_date"

Creation date

"ANN_date"

Last annotation update

"SQ_date"

Last Sequence update

"CREATED_rel"

Created for release

"ANN_rel"

Last annotation for release

"SQ_rel"

Last sequence update for release

"ANN_version"

Version number for entry annotation

"SQ_version"

Version number for sequence

Methods

Standard methods

new

fromText

toText

sort

Writing methods

set_Created ($date, $release)

set_AnnotationUpdate ($date, $release[, $version])

set_SequenceUpdate ($date, $release[, $version])

TRANSITION

The format of the DT line will change in early 2004 from:

  DT   01-JUL-1993 (Rel. 26, Created)
  DT   01-JUL-1993 (Rel. 26, Last sequence update)
  DT   28-FEB-2003 (Rel. 41, Last annotation update)
 
 

to:

  DT   01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
  DT   01-JUL-1993, sequence version 36.
  DT   28-FEB-2003, entry version 54.
 
 

This module supports both formats. To convert an entry from the old to the new format, do:

  $entry->DTs->CREATED_rel("UniProtKB/Swiss-Prot");
  $entry->DTs->ANN_version(54);
  $entry->DTs->SQ_version(36);