TFBS::SitePair.3pm

Langue: en

Version: 2008-01-24 (ubuntu - 24/10/10)

Section: 3 (Bibliothèques de fonctions)

Sommaire

pattern

  Title   : pattern
  Usage   : my $pattern = $sitepair->pattern();  # gets the pattern
                                                 # sets the pattern to $pwm
  Function: gets the pattern object associated with the site pair
  Returns : pattern object, here TFBS::Matrix::PWM object
  Args    : none (get-only method)

GFF

  Title   : GFF
  Usage   : print $site->GFF();
          : print $site->GFF($gff_formatter)
  Function: returns a "standard" multiline GFF string 
  Returns : a string (multiline, newline terminated)
  Args    : a $gff_formatter function reference (optional)

site1 =head2 site2

  Title   : site1
            site2
  Usage   : my $site1 = $sitepair->site1();      
                                                 
  Function:  Returns individual TFBS::Site objects, from the site pair
  Returns : a TFBS::Site
  Args    : none