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GO::Model::GeneProduct.3pm

NAME

   GO::Model::GeneProduct - gene product in a particular species
 
 

DESCRIPTION

represents a gene product in a particular species (this will effectively always be refered to implicitly by the gene symbol even though a gene may have >1 product)

acc

   Usage   -
   Returns -
   Args    -
 
 

symbol

   Usage   -
   Returns -
   Args    -
 
 

type

   Usage   -
   Returns -
   Args    -
 
 

full_name

   Usage   -
   Returns -
   Args    -
 
 

as_str

   Usage   -
   Returns -
   Args    -
 
 

add_synonym

synonym_list

accessor: gets/set list of synonyms [array reference]

speciesdb

   Usage   -
   Returns -
   Args    -
 
 

add_seq

   Usage   -
   Returns -
   Args    - GO::Model::Seq
 
 

seq_list

   Usage   -
   Returns - GO::Model::Seq listref
   Args    -
 
 

seq

   Usage   -
   Returns - GO::Model::Seq
   Args    -
 
 

returns representative sequence object for this product

properties

   Usage   -
   Returns - hashref
   Args    - hashref
 
 

set_property

   Usage   - $sf->set_property("wibble", "on");
   Returns -
   Args    - property key, property scalar
 
 

note: the property is assumed to be multivalued, therefore
  $sf->set_property($k, $scalar) will add to the array, and
  $sf->set_property($k, $arrayref) will set the array

get_property

   Usage   -
   Returns - first element of the property
   Args    - property key
 
 

get_property_list

   Usage   -
   Returns - the property arrayref
   Args    - property key
 
 

to_fasta

   Usage   -
   Returns -
   Args    -
 
 

returns the longest seq by default