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altree-add-S.1p

Langue: en

Version: 2006-01-11 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

altree-add-S - Title...

SYNOPSIS

altree-add-S [options]
  Options:
     --version             program version
     --short-help|h        brief help message
     --help                help message with options descriptions
     --man                 full documentation
     --first-input-file|i  input file 1
     --second-input-file|j input file 2 nb cases/controls per haplotypes
     --output-file|o       output file
     --epsilon|e           epsilon value
     --data-type|t         data type: SNP or DNA
     --proportion|p        proportion of cases in the sample
     --ancestor|a          name of ancestral haplotype
     [--outgroup|g]        name of the outgroup
     [--low|l]             disease statut for haplotype carried by one individual
 
 

OPTIONS

--version
Print the program version and exits.
--short-help
Print a brief help message and exits.
--help
Print a help message with options descriptions and exits.
--man
Prints the manual page and exits.
--first-input-file|i
Input file 1 (paup or phylip file)
--second-input-file|j
Input file 2, contains the number of times a given haplotypes is carried by case and control individuals
--output-file|o
Output file
--epsilon|e
espilon parameter (see formula in the documentation)
--data-type|t
Type of data: DNA (ATGCU) or SNP (0-1)
--proportion|p
Proportion of case individuals in the sample
--outgroup|g
Name of the outgroup (if it is not in the file containing the number of cases and controls per haplotype)
--low|l
If this option is present, it forces the state of the character S to be ``?'' for haplotypes carried by only one individual

DESCRIPTION

This program adds a new character (called ``character S'') to each haplotype in the input file according to the number of cases and controls carrying it.
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qui lui fout un coup de spinfusor dans le cul pour le faire plonger et
secraser et 1 otre ki parvient a foutre 1 coup de shocklance sur laile
-+- PeachSkin in GPJ : Mais oui Thierry, c'était bien un tacle -+-