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bp_biogetseq.1p

NAME

biogetseq - sequence retrieval using OBDA registry

DESCRIPTION

This script retrives sequences from the source defined by users registry setup. The current alternatives are from a local indexed file, sql database or over the web.

USAGE

   Usage: biogetseq --dbname embl --format embl
                    --namespace acc id [ ids... ]
          * dbname defaults to embl
          * format defaults to embl
          * namespace defaults to 'acc' ['id', 'acc', 'version']
          * unnamed arguments are ids in the given namespace