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bp_chaos_plot.pl
Langue: en
Version: 2010-04-29 (fedora - 01/12/10)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
chaos_plot - a chaos plot from DNA and RNA sequencesSYNOPSIS
chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT -o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT -w/--width=WIGHT -h/--height=HEIGHT
DESCRIPTION
This scripts generates image files using GD image library to visualize nucleotide sequences using chaos plot.OPTIONS
Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.The default size of the image file is 600x400.
The sequence input can be provided using any of the three methods:
- unnamed argument
-
chaos_plot filename
- named argument
-
chaos_plot -i filename
- standard input
-
chaos_plot < filename
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.orgHISTORY
This code is based on EMBOSS C code for chaos.c by Ian Longden. Included are documentation from EMBOSS code:Chaos produces a chaos plot. The original application is part of the ACEDB genome database package, written by ** Richard Durbin (MRC LMB, UK) rd@mrc-lmba.cam.ac.uk, and Jean Thierry-Mieg (CRBM du CNRS, France) mieg@crbm1.cnusc.fr
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre