bp_composite_LD.1p

Langue: en

Autres versions - même langue

Version: 2008-06-24 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)

Sommaire

NAME

composite_LD -i filename.prettybase.txt --sortbyld > outfile

SYNOPSIS

   composite_LD -i filename.prettybase [-o out.LD] [-f prettybase/csv] [--sortbyld] [--noconvertindels]

DESCRIPTION

This a script which allows an easy way to calculate composite LD.

OPTIONS

-i or --in filename

-f or --format genotype format (prettybase or CSV)

--sortbyld To see data sorted by LD instead of just all the
               site1/site2 pair LD values.

-o or --out output filename, otherwise will print to STDOUT

--noconvert (applicable for prettybase format file only)
               if specified will NOT attempt to convert indel
               states to 'I' and delete states ('-') to 'D'.

-h or --help see this documentation

AUTHOR Jason Stajich, Matthew Hahn

For more information contact:

Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>