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bp_download_query_genbank.1p
Langue: en
Version: 2010-05-19 (ubuntu - 24/10/10)
Section: 1 (Commandes utilisateur)
NAME
download_query_genbank - script to query Genbank and retrieve recordsUSAGE
download_query_genbank --query "Neurospora[ORGN]" --db nucest -o Ncrassa_ESTs.fa --format fasta download_query_genbank --queryfile 'filewithquery' --db nucest -o Ncrassa_ESTs.fa --format fasta
Other options
Provide ONE of: --query query string OR --queryfile profile file with query OR --gi --gifile file with list of GIs to download Database type: --db database (nucest, protein, nucleotide) -f --format sequence file output format -v --verbose debugging output
Query options
--maxids maximum number of IDs to retrieve in a set --reldate --maxdate maxdate for a record --mindate minimum date for record --datetype edat or mdat (entered or modified)
AUTHOR Jason Stajich
Jason Stajich, jason-AT-bioperl.orgContenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre