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bp_gccalc.pl

Langue: en

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Version: 2010-04-29 (fedora - 01/12/10)

Section: 1 (Commandes utilisateur)

NAME

gccalc - GC content of nucleotide sequences

SYNOPSIS

   gccalc [-f/--format FORMAT] [-h/--help] filename
   or
   gccalc [-f/--format FORMAT] < filename
   or
   gccalc [-f/--format FORMAT] -i filename
 
 

DESCRIPTION

This scripts prints out the GC content for every nucleotide sequence from the input file.

OPTIONS

The default sequence format is fasta.

The sequence input can be provided using any of the three methods:

unnamed argument
   gccalc filename
 
 
named argument
   gccalc -i filename
 
 
standard input
   gccalc < filename
 
 

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR - Jason Stajich

Email jason@bioperl.org

HISTORY

Based on script code (see bottom) submitted by cckim@stanford.edu

Submitted as part of bioperl script project 2001/08/06

Il faut donc mettre ensemble la justice et la force,
et, pour cela, faire que ce qui est juste soit fort,
ou que ce qui est fort soit juste.
-+- Blaise Pascal (1623-1662), Pensées V.298 -+-