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Version: 2010-04-29 (fedora - 01/12/10)

Section: 1 (Commandes utilisateur)


gccalc - GC content of nucleotide sequences


   gccalc [-f/--format FORMAT] [-h/--help] filename
   gccalc [-f/--format FORMAT] < filename
   gccalc [-f/--format FORMAT] -i filename


This scripts prints out the GC content for every nucleotide sequence from the input file.


The default sequence format is fasta.

The sequence input can be provided using any of the three methods:

unnamed argument
   gccalc filename
named argument
   gccalc -i filename
standard input
   gccalc < filename


Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.                  - General discussion  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

AUTHOR - Jason Stajich



Based on script code (see bottom) submitted by

Submitted as part of bioperl script project 2001/08/06

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M : Mais où elle est ?! J'ai chié ici y a pas cinq minutes !
P : Touts les crottes trouvées sans propriétaire sont emmenées à la fourrière et piquées...